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SRX21776555: GSM7780706: eIF4E1_IAA_RNAseq_3; Toxoplasma gondii; OTHER
1 ILLUMINA (Illumina HiSeq 4000) run: 24.9M spots, 7.5G bases, 3Gb downloads

External Id: GSM7780706_r1
Submitted by: Pharmacology & Toxicology, Indiana University School of Medicine
Study: Depletion of mRNA cap-binding protein eIF4E1 drives bradyzoite formation in Toxoplasma gondii [RIBO-seq]
show Abstracthide Abstract
Ingestion of Toxoplasma gondii results in life-long infection due to its ability to convert from the rapidly disseminating tachyzoite stage to the chronic, encysted bradyzoite stage. The control of mRNA translation has been suggested to play a key role in the signaling required to trigger bradyzoite formation. In eukaryotes, translational control primarily operates at two key points during the assembly of translation initiation factors. The phosphorylation of eIF2 affects mRNA start codon recognition and promotes differentiation in a variety of parasites. Modulating eIF4F function is the second pan-eukaryote regulatory point but remains unexplored in Toxoplasma. Here, we uncover the role that eIF4F-centric regulation plays in regulating bradyzoite formation by targeting the cap-binding subunit, eIF4E1. We discover that eIF4E1 coordinates two eIF4F complexes and binds the 5'-end of all mRNAs transcribed in tachyzoites, many of which show evidence of stemming from heterogenous transcriptional start sites. Together, this indicates that eIF4E1 is the predominant cap-binding protein in Toxoplasma tachyzoites. We also demonstrate that eIF4E1 knockdown or its chemical inhibition triggers the efficient formation of bradyzoites in the absence of other stresses and that stress-induced bradyzoites reduce their eIF4E1 expression. This study unearths a role for eIF4F-centric translational control in controlling Toxoplasma differentiation, suggesting that control of cap-dependent translation regulates the process of bradyzoite formation. Overall design: expression changes at the transcriptional and translational levels upon IAA-induced eIF4E1 depletion in Toxoplasma gondii tachyzoites
Sample: eIF4E1_IAA_RNAseq_3
SAMN37395358 • SRS18881973 • All experiments • All runs
Library:
Name: GSM7780706
Instrument: Illumina HiSeq 4000
Strategy: OTHER
Source: TRANSCRIPTOMIC
Selection: other
Layout: PAIRED
Construction protocol: cytoplasmic lysate was collected and an aliquot was immediately stored in Trizol for RNA-seq samples. The rest was digested with RNaseI and monosomes were collecte by ultracentrifugation on a sucrose gradient. Ribosome-protected fragments (RFP) were purified after gel electrophoresis total RNA was fragmented by alkaline hydrolysis. Fragments were purfied by gel electrophoresis. fragments were dephosphorylated, ligated at 5' end with barcoded adapter, rRNA removal with sequential treatment of sample with riboPOOLs kit for human then Toxoplasma, phosphorylated, ligated at 3' end with SR-adapter, reverse transcribed & PCR with NEBnext barcoded adapters
Runs: 1 run, 24.9M spots, 7.5G bases, 3Gb
Run# of Spots# of BasesSizePublished
SRR2606041724,924,8837.5G3Gb2023-11-02

ID:
29484882

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